SE US

if (!requireNamespace("librarian", quietly = TRUE)) {
  # If not installed, install the package
  install.packages("librarian")
}

librarian::shelf(
  dplyr,
  here,
  htmltools,
  reactablefmtr,
  tidyverse
)

SE US Report

source(here("R/getCleanedData.R"))
data <- getCleanedData() %>%
  filter(mbon.project == params$project_id)

df <- data %>% select(
  Dataset.title,
  Technical.POC.email.,
  
  doi,

  erddap,
  erddap_link, 
  
  obis,
  obis_link,

  ncei,
  ncei_link,
  
  web,
  web_link,
  
  code,
  code_link
)

df %>% 
  reactable(
    theme = pff(centered = TRUE),
    defaultColDef = colDef(footerStyle = list(fontWeight = "bold")),
    columns = list(
      Dataset.title = colDef(
        minWidth = 175,
        footer = 'Total',
        cell = merge_column(
          data = .,
          merged_name = 'Technical.POC.email.',
          merged_position = 'below',
          merged_size = 14,
          size = 16,
          color = '#333333',
          spacing = -1
        )
      ),
      Technical.POC.email. = colDef(show = FALSE),
      
      doi = colDef(
        cell = function(value, index) {
          # Check if the link is NA or NULL
          url <- value
          if (is.na(url) || is.null(url) || trimws(url) == "") {
            return("No")
          } else {
            # Return clickable link if URL is available
            sprintf('<a href="https://doi.org/%s" target="_blank">Yes</a>', value)
          }
        },
        html = TRUE  # Enable HTML rendering in the cell
      ),
      
      erddap = colDef(
        cell = function(value, index) {
          # Check if the link is NA or NULL
          url <- df$erddap_link[index]
          if (is.na(url) || is.null(url) || trimws(url) == "") {
            return(value)  # Just return the original text if no link is available
          } else {
            # Return clickable link if URL is available
            sprintf('<a href="%s" target="_blank">%s</a>', url, value)
          }
        },
        html = TRUE  # Enable HTML rendering in the cell
      ),
      erddap_link = colDef(show = FALSE),
      
      obis = colDef(
        cell = function(value, index) {
          # Check if the link is NA or NULL
          url <- df$obis_link[index]
          if (is.na(url) || is.null(url) || trimws(url) == "") {
            return(value)  # Just return the original text if no link is available
          } else {
            # Return clickable link if URL is available
            sprintf('<a href="%s" target="_blank">%s</a>', url, value)
          }
        },
        html = TRUE  # Enable HTML rendering in the cell
      ),
      obis_link = colDef(show = FALSE),
      
      ncei = colDef(
        cell = function(value, index) {
          # Check if the link is NA or NULL
          url <- df$ncei_link[index]
          if (is.na(url) || is.null(url) || trimws(url) == "") {
            return(value)  # Just return the original text if no link is available
          } else {
            # Return clickable link if URL is available
            sprintf('<a href="%s" target="_blank">%s</a>', url, value)
          }
        },
        html = TRUE  # Enable HTML rendering in the cell
      ),
      ncei_link = colDef(show = FALSE),
      
      web = colDef(
        cell = function(value, index) {
          # Check if the link is NA or NULL
          url <- df$web_link[index]
          if (is.na(url) || is.null(url) || trimws(url) == "") {
            return(value)  # Just return the original text if no link is available
          } else {
            # Return clickable link if URL is available
            sprintf('<a href="%s" target="_blank">%s</a>', url, value)
          }
        },
        html = TRUE  # Enable HTML rendering in the cell
      ),
      web_link = colDef(show = FALSE),
      
      code = colDef(
        cell = function(value, index) {
          # Check if the link is NA or NULL
          url <- df$code_link[index]
          if (is.na(url) || is.null(url) || trimws(url) == "") {
            return(value)  # Just return the original text if no link is available
          } else {
            # Return clickable link if URL is available
            sprintf('<a href="%s" target="_blank">%s</a>', url, value)
          }
        },
        html = TRUE  # Enable HTML rendering in the cell
      ),
      code_link = colDef(show = FALSE)
    )
  ) %>% 
  add_title(
    title = 'Dataset Publication Summary'
  )

Dataset Publication Summary